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Belete Berhanu, Ethiopia Bisrat, Yolanda Gil, Deborah Khider, Maximiliano Osorio, Varun Ratnakar, Hernan Vargas (2022). An AI Approach to Integrating Climate, Hydrology, and Agriculture Models. Proceedings of the First International Workshop on Social Impact of AI for Africa (SIAIA), held at the 36th Annual Conference of the Association for the Advancement of Artificial Intelligence (AAAI-22).

Yolanda Gil (2021). Will AI Write Scientific Papers in the Future?. AI Magazine.

Eunhye Ahn, Yolanda Gil, Emily Putnam-Horstein (2021). Predicting Youth at High Risk of Aging Out of Foster Care using Machine Learning Methods. Child Abuse and Neglect.

Yolanda Gil (2021). More Computing and Less Programming: A Proposal to Broaden Participation in Data Science. Harvard Data Science Review.

Deborah Khider, Pratheek Athreya, Varun Ratnakar, Yolanda Gil, Feng Zhu, Myron Kwan, Julien Emile-Geay (2020). Towards Automating Time Series Analysis for the Paleogeosciences. Proceedings of the Sixth Workshop on Mining and Learning from Time Series (MiLeTS), held in conjunction with the 26th ACM SIGKDD Conference on Knowledge Discovery and Datamining (KDD'20).

Katrina L. Grasby, Neda Jahanshad, Jodie N. Painter, Lucı́a Colodro-Conde, Janita Bralten, Derrek P. Hibar, Penelope A. Lind, Fabrizio Pizzagalli, Christopher R. K. Ching, Mary Agnes B. McMahon, Natalia Shatokhina, Leo C. P. Zsembik, Sophia I. Thomopoulos, Alyssa H. Zhu, Lachlan T. Strike, Ingrid Agartz, Saud Alhusaini, Marcio A. A. Almeida, Dag Alnæs, Inge K. Amlien, Micael Andersson, Tyler Ard, Nicola J. Armstrong, Allison Ashley-Koch, Joshua R. Atkins, Manon Bernard, Rachel M. Brouwer, Elizabeth E. L. Buimer, Robin Bülow, Christian Bürger, Dara M. Cannon, Mallar Chakravarty, Qiang Chen, Joshua W. Cheung, Baptiste Couvy-Duchesne, Anders M. Dale, Shareefa Dalvie, Tânia K. de Araujo, Greig I. de Zubicaray, Sonja M. C. de Zwarte, Anouk den Braber, Nhat Trung Doan, Katharina Dohm, Stefan Ehrlich, Hannah-Ruth Engelbrecht, Susanne Erk, Chun Chieh Fan, Iryna O. Fedko, Sonya F. Foley, Judith M. Ford, Masaki Fukunaga, Melanie E. Garrett, Tian Ge, Sudheer Giddaluru, Aaron L. Goldman, Melissa J. Green, Nynke A. Groenewold, Dominik Grotegerd, Tiril P. Gurholt, Boris A. Gutman, Narelle K. Hansell, Mathew A. Harris, Marc B. Harrison, Courtney C. Haswell, Michael Hauser, Stefan Herms, Dirk J. Heslenfeld, New Fei Ho, David Hoehn, Per Hoffmann, Laurena Holleran, Martine Hoogman, Jouke-Jan Hottenga, Masashi Ikeda, Deborah Janowitz, Iris E. Jansen, Tianye Jia, Christiane Jockwitz, Ryota Kanai, Sherif Karama, Dalia Kasperaviciute, Tobias Kaufmann, Sinead Kelly, Masataka Kikuchi, Marieke Klein, Michael Knapp, Annchen R. Knodt, Bernd Krämer, Max Lam, Thomas M. Lancaster, Phil H. Lee, Tristram A. Lett, Lindsay B. Lewis, Iscia Lopes-Cendes, Michelle Luciano, Fabio Macciardi, Andre F. Marquand, Samuel R. Mathias, Tracy R. Melzer, Yuri Milaneschi, Nazanin Mirza-Schreiber, Jose C. V. Moreira, Thomas W. Mühleisen, Bertram Müller-Myhsok, Pablo Najt, Soichiro Nakahara, Kwangsik Nho, Loes M. Olde Loohuis, Dimitri Papadopoulos Orfanos, John F. Pearson, Toni L. Pitcher, Benno Pütz, Yann Quidé, Anjanibhargavi Ragothaman, Faisal M. Rashid, William R. Reay, Ronny Redlich, Céline S. Reinbold, Jonathan Repple, Geneviève Richard, Brandalyn C. Riedel, Shannon L. Risacher, Cristiane S. Rocha, Nina Roth Mota, Lauren Salminen, Arvin Saremi, Andrew J. Saykin, Fenja Schlag, Lianne Schmaal, Peter R. Schofield, Rodrigo Secolin, Chin Yang Shapland, Li Shen, Jean Shin, Elena Shumskaya, Ida E. Sønderby, Emma Sprooten, Katherine E. Tansey, Alexander Teumer, Anbupalam Thalamuthu, Diana Tordesillas-Gutiérrez, Jessica A. Turner, Anne Uhlmann, Costanza Ludovica Vallerga, Dennis van der Meer, Marjolein M. J. van Donkelaar, Liza van Eijk, Theo G. M. van Erp, Neeltje E. M. van Haren, Daan van Rooij, Marie-José van Tol, Jan H. Veldink, Ellen Verhoef, Esther Walton, Mingyuan Wang, Yunpeng Wang, Joanna M. Wardlaw, Wei Wen, Lars T. Westlye, Christopher D. Whelan, Stephanie H. Witt, Katharina Wittfeld, Christiane Wolf, Thomas Wolfers, Jing Qin Wu, Clarissa L. Yasuda, Dario Zaremba, Zuo Zhang, Marcel P. Zwiers, Eric Artiges, Amelia A. Assareh, Rosa Ayesa-Arriola, Aysenil Belger, Christine L. Brandt, Gregory G. Brown, Sven Cichon, Joanne E. Curran, Gareth E. Davies, Franziska Degenhardt, Michelle F. Dennis, Bruno Dietsche, Srdjan Djurovic, Colin P. Doherty, Ryan Espiritu, Daniel Garijo, Yolanda Gil, Penny A. Gowland, Robert C. Green, Alexander N. Häusler, Walter Heindel, Beng-Choon Ho, Wolfgang U. Hoffmann, Florian Holsboer, Georg Homuth, Norbert Hosten, Clifford R. Jack, MiHyun Jang, Andreas Jansen, Nathan A. Kimbrel, Knut Kolsk ̊ar, Sanne Koops, Axel Krug, Kelvin O. Lim, Jurjen J. Luykx, Daniel H. Mathalon, Karen A. Mather, Venkata S. Mattay, Sarah Matthews, Jaqueline Mayoral Van Son, Sarah C. McEwen, Ingrid Melle, Derek W. Morris, Bryon A. Mueller, Matthias Nauck, Jan E. Nordvik, Markus M. Nöthen, Daniel S. O\textquoterightLeary, Nils Opel, Marie-Laure Paillère Martinot, G. Bruce Pike, Adrian Preda, Erin B. Quinlan, Paul E. Rasser, Varun Ratnakar, Simone Reppermund, Vidar M. Steen, Paul A. Tooney, Fábio R. Torres, Dick J. Veltman, James T. Voyvodic, Robert Whelan, Tonya White, Hidenaga Yamamori, Hieab H. H. Adams, Joshua C. Bis, Stephanie Debette, Charles Decarli, Myriam Fornage, Vilmundur Gudnason, Edith Hofer, M. Arfan Ikram, Lenore Launer, W. T. Longstreth, Oscar L. Lopez, Bernard Mazoyer, Thomas H. Mosley, Gennady V. Roshchupkin, Claudia L. Satizabal, Reinhold Schmidt, Sudha Seshadri, Qiong Yang, Marina K. M. Alvim, David Ames, Tim J. Anderson, Ole A. Andreassen, Alejandro Arias-Vasquez, Mark E. Bastin, Bernhard T. Baune, Jean C. Beckham, John Blangero, Dorret I. Boomsma, Henry Brodaty, Han G. Brunner, Randy L. Buckner, Jan K. Buitelaar, Juan R. Bustillo, Wiepke Cahn, Murray J. Cairns, Vince Calhoun, Vaughan J. Carr, Xavier Caseras, Svenja Caspers, Gianpiero L. Cavalleri, Fernando Cendes, Aiden Corvin, Benedicto Crespo-Facorro, John C. Dalrymple-Alford, Udo Dannlowski, Eco J. C. de Geus, Ian J. Deary, Norman Delanty, Chantal Depondt, Sylvane Desrivières, Gary Donohoe, Thomas Espeseth, Guillén Fernández, Simon E. Fisher, Herta Flor, Andreas J. Forstner, Clyde Francks, Barbara Franke, David C. Glahn, Randy L. Gollub, Hans J. Grabe, Oliver Gruber, Asta K. H\åberg, Ahmad R. Hariri, Catharina A. Hartman, Ryota Hashimoto, Andreas Heinz, Frans A. Henskens, Manon H. J. Hillegers, Pieter J. Hoekstra, Avram J. Holmes, L. Elliot Hong, William D. Hopkins, Hilleke E. Hulshoff Pol, Terry L. Jernigan, Erik G. Jönsson, René S. Kahn, Martin A. Kennedy, Tilo T. J. Kircher, Peter Kochunov, John B. J. Kwok, Stephanie Le Hellard, Carmel M. Loughland, Nicholas G. Martin, Jean-Luc Martinot, Colm McDonald, Katie L. McMahon, Andreas Meyer-Lindenberg, Patricia T. Michie, Rajendra A. Morey, Bryan Mowry, Lars Nyberg, Jaap Oosterlaan, Roel A. Ophoff, Christos Pantelis, Tomas Paus, Zdenka Pausova, Brenda W. J. H. Penninx, Tinca J. C. Polderman, Danielle Posthuma, Marcella Rietschel, Joshua L. Roffman, Laura M. Rowland, Perminder S. Sachdev, Philipp G. Sämann, Ulrich Schall, Gunter Schumann, Rodney J. Scott, Kang Sim, Sanjay M. Sisodiya, Jordan W. Smoller, Iris E. Sommer, Beate St Pourcain, Dan J. Stein, Arthur W. Toga, Julian N. Trollor, Nic J. A. Van der Wee, Dennis van \textquoterightt Ent, Henry Völzke, Henrik Walter, Bernd Weber, Daniel R. Weinberger, Margaret J. Wright, Juan Zhou, Jason L. Stein, Paul M. Thompson, Sarah E. Medland (2020). The genetic architecture of the human cerebral cortex. Science.

Sarah Cohen-Boulakia, Stian Soiland-Reyes, Daniel Garijo, Yolanda Gil, Michael R. Crusoe, Kristian Peters, Daniel Schoberhidden Carole Goble (2020). FAIR Computational Workflows. Data Intelligence, Special Issue on FAIR (Findable, Accessible, Interoperable and Reusable) Principles.

Paul M. Thompson, Neda Jahanshad, Christopher R. K. Ching, Lauren E. Salminen, Sophia I. Thomopoulos, Joanna Bright, Bernhard T. Baune, Sara Bertolín, Janita Bralten, Willem B. Bruin, Robin Bülow, Jian Chen, Yann Chye, Udo Dannlowski, Carolien G. F. de Kovel, Gary Donohoe, Lisa T. Eyler, Stephen V. Faraone, Pauline Favre, Courtney A. Filippi, Thomas Frodl, Daniel Garijo, Yolanda Gil, Hans J. Grabe, Katrina L. Grasby, Tomas Hajek, Laura K. M. Han, Sean N. Hatton, Kevin Hilbert, Tiffany C. Ho, Laurena Holleran, Georg Homuth, Norbert Hosten, Josselin Houenou, Iliyan Ivanov, Tianye Jia, Sinead Kelly, Marieke Klein, Jun Soo Kwon, Max A. Laansma, Jeanne Leerssen, Ulrike Lueken, Abraham Nunes, Joseph O' Neill, Nils Opel, Fabrizio Piras, Federica Piras, Merel C. Postema, Elena Pozzi, Natalia Shatokhina, Carles Soriano-Mas, Gianfranco Spalletta, Daqiang Sun, Alexander Teumer, Amanda K. Tilot, Leonardo Tozzi, Celia van der Merwe, Eus J. W. Van Someren, Guido A. van Wingen, Henry Völzke, Esther Walton, Lei Wang, Anderson M. Winkler, Katharina Wittfeld, Margaret J. Wright, Je-Yeon Yun, Guohao Zhang, Yanli Zhang-James, Bhim M. Adhikari, Ingrid Agartz, Moji Aghajani, André Aleman, Robert R. Althoff, Andre Altmann, Ole A. Andreassen, David A. Baron, Brenda L. Bartnik-Olson, Janna Marie Bas-Hoogendam, Arielle R. Baskin-Sommers, Carrie E. Bearden, Laura A. Berner, Premika S. W. Boedhoe, Rachel M. Brouwer, Jan K. Buitelaar, Karen Caeyenberghs, Charlotte A. M. Cecil, Ronald A. Cohen, James H. Cole, Patricia J. Conrod, Stephane A. De Brito, Sonja M. C. de Zwarte, Emily L. Dennis, Sylvane Desrivières, Danai Dima, Stefan Ehrlich, Carrie Esopenko, Graeme Fairchild, Simon E. Fisher, Jean-Paul Fouche, Clyde Francks, Sophia Frangou, Barbara Franke, Hugh P. Garavan, David C. Glahn, Nynke A. Groenewold, Tiril P. Gurholt, Boris A. Gutman, Tim Hahn, Ian H. Harding, Dennis Hernaus, Derrek P. Hibar, Frank G. Hillary, Martine Hoogman, Hilleke E. Hulshoff Pol, Maria Jalbrzikowski, George A. Karkashadze, Eduard T. Klapwijk, Rebecca C. Knickmeyer, Peter Kochunov, Inga K. Koerte, Xiang-Zhen Kong, Sook-Lei Liew, Alexander P. Lin, Mark W. Logue, Eileen Luders, Fabio Macciardi, Scott Mackey, Andrew R. Mayer, Carrie R. McDonald, Agnes B. McMahon, Sarah E. Medland, Gemma Modinos, Rajendra A. Morey, Sven C. Mueller, Pratik Mukherjee, Leyla Namazova-Baranova, Talia M. Nir, Alexander Olsen, Peristera Paschou, Daniel S. Pine, Fabrizio Pizzagalli, Miguel E. Renter\á, Jonathan D. Rohrer, Philipp G. Sämann, Lianne Schmaal, Gunter Schumann, Mark S. Shiroishi, Sanjay M. Sisodiya, Dirk J. A. Smit, Ida E. Sønderby, Dan J. Stein, Jason L. Stein, Masoud Tahmasian, David F. Tate, Jessica A. Turner, Odile A. van den Heuvel, Nic J. A. Van der Wee, Ysbrand D. van der Werf, Theo G. M. van Erp, Neeltje E. M. van Haren, Daan van Rooij, Laura S. van Velzen, Ilya M. Veer, Dick J. Veltman, Julio E. Villalon-Reina, Henrik Walter, Christopher D. Whelan, Elisabeth A. Wilde, Mojtaba Zarei, Vladimir Zelman, for the ENIGMA Consortium (2020). ENIGMA and global neuroscience: A decade of large-scale studies of the brain in health and disease across more than 40 countries. Nature Translational Psychiatry.

Yolanda Gil, James Honaker, Shikhar Gupta, Yibo Ma, Vito D' Orazio, Daniel Garijo, Shruti Gadewar, Qifan Yang, Neda Jahanshad (2019). Towards Human-Guided Machine Learning. Proceedings of the 24th ACM International Conference on Intelligent User Interfaces (IUI).

Daniel Garijo, Shobeir Fakhraei, Varun Ratnakar, Qifan Yang, Hanna Endrias, Yibo Ma, Regina Wang, Michael Bornstein, Joanna Bright, Yolanda Gil, Neda Jahanshad (2019). Towards Automated Hypothesis Testing in Neuroscience. Proceedings of the Fifth Workshop on Data Management and Analytics for Medicine and Healthcare (DMAH), held in conjunction with the 45th International Conference on Very Large Data Bases (VLDB).

Arunima Srivastava, Ravali Adusumilli, Hunter Boyce, Daniel Garijo, Varun Ratnakar, Rajiv Mayani, Thomas Yu, Raghu Machiraju, Yolanda Gil, Parag Mallick (2019). Semantic Workflows for Benchmark Challenges: Enhancing Comparability, Reusability and Reproducibility. Proceedings of the Pacific Symposium on Biocomputing (PSB).

Juan Manuel Carrillo Garcia, Daniel Garijo, Mark Crowley, Rober Carrillo, Yolanda Gil, Katherine Borda (2019). Semantic Workflows and Machine Learning for the Assessment of Carbon Storage by Urban Trees. Proceedings of the Third Workshop on Capturing Scientific Knowledge (SciKnow), held in conjunction with the 2019 ACM International Conference on Knowledge Capture (K-CAP'19).

D. Khider, J. Emile-Geay, N. P. McKay, Y. Gil, D. Garijo, V. Ratnakar, M. Alonso-Garcia, S. Bertrand, O. Bothe, P. Brewer, A. Bunn, M. Chevalier, L. Comas-Bru, A. Csank, E. Dassié, K. DeLong, T. Felis, P. Francus, A. Frappier, W. Gray, S. Goring, L. Jonkers, M. Kahle, D. Kaufman, N. M. Kehrwald, B. Martrat, H. McGregor, J. Richey, A. Schmittner, N. Scroxton, E. Sutherland, K. Thirumalai, K. Allen, F. Arnaud, Y. Axford, T. Barrows, L. Bazin, S. E. Pilaar Birch, E. Bradley, J. Bregy, E. Capron, O. Cartapanis, H.-W. Chiang, K. M. Cobb, M. Debret, R. Dommain, J. Du, K. Dyez, S. Emerick, M. P. Erb, G. Falster, W. Finsinger, D. Fortier, Nicolas Gauthier, S. George, E. Grimm, J. Hertzberg, F. Hibbert, A. Hillman, W. Hobbs, M. Huber, A. L. C. Hughes, S. Jaccard, J. Ruan, M. Kienast, B. Konecky, G. Le Roux, V. Lyubchich, V. F. Novello, L. Olaka, J. W. Partin, C. Pearce, S. J. Phipps, C. Pignol, N. Piotrowska, M.-S. Poli, A. Prokopenko, F. Schwanck, C. Stepanek, G. E. A. Swann, R. Telford, E. Thomas, Z. Thomas, S. Truebe, L. von Gunten, A. Waite, N. Weitzel, B. Wilhelm, J. Williams, J. J. Williams, M. Winstrup, N. Zhao, Y. Zhou (2019). PaCTS 1.0: A Crowdsourced Reporting Standard for Paleoclimate Data. Paleoceanography and Paleoclimatology.

Daniel Garijo, Maximiliano Osorio, Deborah Khider, Varun Ratnakar, Yolanda Gil (2019). OKG-Soft: An Open Knowledge Graph with Machine Readable Scientific Software Metadata. Proceedings of the Fifteenth International IEEE eScience Conference.

Lingkai Cen, Joon-Ho Choi, Xiaomeng Yao, Yolanda Gil, Shrikanth Narayanan, Maryann Pentz (2019). A Personal Visual Comfort Model: Predict an Individual' s Visual Comfort Using Occupant Eye Pupil Sizes and Machine Learning. Tenth International Conference on Indoor Air Quality, Ventilation and Energy Conservation in Buildings, IOP Conference Series in Materials Science and Engineering (609)4.

Yolanda Gil, Bart Selman (2019). A 20-Year Community Roadmap for Artificial Intelligence Research in the US. Computing Community Consortium (CCC) and Association for the Advancement of Artificial Intelligence (AAAI) report published in arXiv.

Rafael Ferreira da Silva, Daniel Garijo, Scott D. Peckham, Yolanda Gil, Ewa Deelman, Varun Ratnakar (2018). Towards Model Integration via Abductive Workflow Composition and Multi-Method Scalable Model Execution. Proceedings of the Ninth International Congress on Environmental Modeling and Software.

Lucas Carvalho, Daniel Garijo, Claudia Bauzer Medeiros, Yolanda Gil (2018). Semantic Software Metadata for Workflow Exploration and Evolution. Proceedings of the Fourteenth IEEE International Conference on eScience.

Ken Cheong, Daniel Garijo, William K. Cheung, Yolanda Gil (2018). PSM-Flow: Probabilistic Subgraph Mining for Discovering Reusable Fragments in Workflows. Proceedings of IEEE/WIC/ACM International Conference on Web Intelligence (WI-18).

Yolanda Gil, Ke-Thia Yao, Varun Ratnakar, Daniel Garijo, Greg Ver Steeg, Pedro Szekely, Rob Brekelmans, Mayank Kejriwal, Fanghao Luo, I-Hui Huang (2018). P4ML: A Phased Performance-Based Pipeline Planner for Automated Machine Learning. Proceedings of Machine Learning Research, ICML 2018 AutoML Workshop.

Odd Erik Gundersen, Yolanda Gil, David W. Aha (2018). On Reproducible AI: Towards Reproducible Research, Open Science, and Digital Scholarship in AI Publications. AI Magazine.

Yolanda Gil, Kelly Cobourn, Ewa Deelman, Chris Duffy, Rafael Ferreira da Silva, Armen Kemanian, Craig Knoblock, Vipin Kumar, Scott Peckham, Lucas Carvalho, Yao-Yi Chiang, Daniel Garijo, Deborah Khider, Ankush Khandelwal, Minh Pahm, Jay Pujara, Varun Ratnakar, Maria Stoica, Binh Vu (2018). MINT: Model Integration Through Knowledge-Powered Data and Process Composition. Proceedings of the Ninth International Congress on Environmental Modeling and Software.

Julien Emile-Geay, Deborah Khider, Nicholas P. McKay, Yolanda Gil, Daniel Garijo, Varun Ratnakar (2018). LinkedEarth: Supporting Paleoclimate Data Standards and Crowd Curation. Past Global Changes Magazine.

Agnes McMahon, Daniel Garijo, Ryan Espiritu, Faisal Rashid, MiHyun Jang, Tejal Patted, Varun Ratnakar, Yolanda Gil, Paul Thompson, Neda Jahanshad (2018). ENIGMA-ODS: A Platform for Global Neuroscience Collaborations in the ENIGMA Consortium. INCF Neuroinformatics Congress.

Daniel Garijo, Deborah Khider, Yolanda Gil, Lucas Carvalho, Bakinam Essawy, Suzanne Pierce, Daniel H. Lewis, Varun Ratnakar, Scott D. Peckham, Chris Duffy, Jonathan Goodall (2018). A Semantic Model Registry to Support Comparison and Reuse. Proceedings of the Ninth International Congress on Environmental Modeling and Software.

Yolanda Gil, Daniel Garijo, Varun Ratnakar, Rajiv Mayani, Ravali Adusumilli, Hunter Boyce, Arunima Srivastava, Parag Mallick (2017). Towards Continuous Scientific Data Analysis and Hypothesis Evolution. Proceedings of the Thirty-First AAAI Conference on Artificial Intelligence (AAAI-17).

Yolanda Gil, Daniel Garijo (2017). Towards Automating Data Narratives. Proceedings of the Twenty-Second ACM International Conference on Intelligent User Interfaces (IUI-17).

MiHyun Jang, Tejal Patted, Yolanda Gil, Daniel Garijo, Varun Ratnakar, Jie Ji, Prince Wang, Aggie McMahon, Paul M. Thompson, Neda Jahanshad (2017). Towards Automatic Generation of Portions of Scientific Papers for Large Multi-Institutional Collaborations Based on Semantic Metadata. Proceedings of the Workshop on Enabling Open Semantic Science, co-located with the Sixteenth International Semantic Web Conference (ISWC).

Yolanda Gil (2017). Thoughtful Artificial Intelligence: Forging A New Partnership for Data Science and Scientific Discovery. Data Science.

Daniel Garijo, Yolanda Gil, Varun Ratnakar (2017). The DISK Hypothesis Ontology: Capturing Hypothesis Evolution for Automated Discovery. Proceedings of the Workshop on Capturing Scientific Knowledge (SciKnow), held in conjunction with the ACM International Conference on Knowledge Capture (K-CAP).

Ricky Sethi, Yolanda Gil (2017). Scientific Workflows in Data Analysis: Bridging Expertise Across Multiple Domains. Future Generation Computer Systems.

Lucas A. M. C. Carvalho, Bakinam T. Essawy, Daniel Garijo, Claudia Bauzer Medeiros, Yolanda Gil (2017). Requirements for Supporting the Iterative Exploration of Scientific Workflow Variants. Proceedings of the Workshop on Capturing Scientific Knowledge (SciKnow), held in conjunction with the ACM International Conference on Knowledge Capture (K-CAP).

Lucas A. M. C. Carvalho, Regina Wang, Yolanda Gil, Daniel Garijo (2017). NiW: Converting Notebooks into Workflows to Capture Dataflow and Provenance. Proceedings of the Workshop on Capturing Scientific Knowledge (SciKnow), held in conjunction with the ACM International Conference on Knowledge Capture (K-CAP).

Yolanda Gil, Daniel Garijo, Margaret Knoblock, Alyssa Deng, Ravali Adusumilli, Varun Ratnakar, Parag Mallick (2017). Improving Publication and Reproducibility of Computational Experiments through Workflow Abstractions. Proceedings of the Workshop on Capturing Scientific Knowledge (SciKnow), held in conjunction with the ACM International Conference on Knowledge Capture (K-CAP).

Daniel Garijo, Yolanda Gil, Oscar Corcho (2017). Abstract, Link, Publish, Exploit: An End to End Framework for Workflow Sharing. Future Generation Computer Systems.

Yolanda Gil, Daniel Garijo, Varun Ratnakar, Deborah Khider, Julien Emile-Geay, Nicholas McKay (2017). A Controlled Crowdsourcing Approach to Scientific Ontology Development and Data Annotation. Proceedings of the Sixteenth International Semantic Web Conference (ISWC).

Bakinam T. Essawy, Jonathan L. Goodall, Hao Xu, Yolanda Gil (2017). Evaluation of the OntoSoft Ontology for Describing Legacy Hydrologic Modeling Software.

Environmental Modelling & Software*

Yolanda Gil, C�dric H. David, Ibrahim Demir, Bakinam T. Essawy, Robinson W. Fulweiler, Jonathan L. Goodall, Leif Karlstrom, Huikyo Lee, Heath J. Mills, Ji-Hyun Oh, Suzanne A Pierce, Allen Pope, Mimi W. Tzeng, Sandra R. Villamizar, Xuan Yu (2016). Towards the Geoscience Paper of the Future: Best Practices for Documenting and Sharing Research from Data to Software to Provenance. Earth and Space Science.

Yolanda Gil (2016). Teaching Big Data Analytics Skills with Intelligent Workflow Systems. Proceedings of the Sixth Symposium on Educational Advances in Artificial Intelligence (EAAI), colocated with the National Conference of the Association for the Advancement of Artificial Intelligence (AAAI).

Ricky J. Sethi, Yolanda Gil (2016). Reproducibility in Computer Vision: Towards Open Publication of Image Analysis Experiments as Semantic Workflows. Proceedings of the Twelfth IEEE Conference on eScience.

Yolanda Gil, Daniel Garijo, Saurabh Mishra, Varun Ratnakar (2016). OntoSoft: A Distributed Semantic Registry for Scientific Software. Proceedings of the Twelfth IEEE Conference on eScience.

Victoria Stodden, Marcia McNutt, David H. Bailey, Ewa Deelman, Yolanda Gil, Brooks Hanson, Michael A. Heroux, John P. A. Ioannidis, Michela Taufer (2016). Enhancing Reproducibility for Computational Methods. Science.

Yolanda Gil, Varun Ratnakar (2016). Dynamically Generated Metadata and Replanning by Interleaving Workflow Generation and Execution. Proceedings of the Tenth IEEE International Conference on Semantic Computing (ICSC).

Xuan Yu, Chris Duffy, Yolanda Gil, Lorne Leonard, Gopal Bhatt, and Evan Thomas (2016). Cyber-Innovated Watershed Research at the Shale Hills Critical Zone Observatory. IEEE Systems Journal.

Yolanda Gil, Daniel Garijo, Varun Ratnakar, Rajiv Mayani, Ravali Adusumilli, Hunter Boyce, Parag Mallick (2016). Automated Hypothesis Testing with Large Scientific Data Repositories. Proceedings of the Fourth Annual Conference on Advances in Cognitive Systems (ACS).

Matty Mookerjee, Daniel Vieira, Marjorie A. Chan, Yolanda Gil, Terry L. Pavlis, Frank S. Spear, Basil Tikoff (2015). We Need to Talk: Facilitating communication between field-based geoscience and cyberinfrastructure communities. GSA Today.

Christina L Zheng, Varun Ratnakar, Yolanda Gil, Shannon K McWeeney (2015). Use of Semantic Workflows to Enhance Transparency and Reproducibility in Clinical Omics. Genome Medicine.

Yolanda Gil, Dipsy Kapoor, Reed Markham, Varun Ratnakar (2015). The Provenance Bee Wiki: Tracking the Growth of Semantic Wiki Communities. Proceedings of the Eighth ACM International Conference on Knowledge Capture.

Yolanda Gil, Chris Duffy, Chris Mattmann, Erin Robinson, Cedric David, Ibrahim Demir, Bakinam Essawy, Robinson W. Fulweiler, Jon Goodall, Leif Karlstrom, Kyo Lee andHeath Mills, Ji-Hyun Oh, Suzanne Pierce, Allen Pope, Mimi Tzeng, Karan Venayagamoorthy, Sandra Villamizar, Xuan Yu (2015). The Geoscience Paper of the Future Initiative: Training Scientists in Best Practices of Software Sharing. Third Workshop on Sustainable Software for Science: Practice and Experiences (WSSSPE3).

Yolanda Gil, Felix Michel, Varun Ratnakar, Jordan Read, Matheus Hauder, Christopher Duffy, Paul Hanson, Hilary Dugan (2015). Supporting Open Collaboration in Science through Explicit and Linked Semantic Description of Processes. Proceedings of the Twelfth European Semantic Web Conference (ESWC).

Yolanda Gil, Felix Michel, Varun Ratnakar, Matheus Hauder (2015). Organic Data Science: A Task-Centered Interface to On-Line Collaboration in Science. Proceedings of the ACM International Conference on Intelligent User Interfaces.

Neda Jahanshad, Sarah Madsen, Yervand Azatian, Derrek P. Hibar, Paul M. Thompson, Yolanda Gil (2015). Open Science and Collaboration for Enhancing NeuroImaging Genetics through Meta-Analysis (ENIGMA) through the Organic Data Science Framework. Science of Team Science Conference (SciTS).

Yolanda Gil, Varun Ratnakar, Daniel Garijo (2015). OntoSoft: Capturing Scientific Software Metadata. Proceedings of the Eighth ACM International Conference on Knowledge Capture.

Yolanda Gil (2015). Human Tutorial Instruction in the Raw. ACM Transactions on Interactive Intelligent Systems.

Yolanda Gil, Suzanne Pierce (2015). Final Report of the 2015 NSF Workshop on Intelligent Systems for Geosciences.

Matty Mookerjee, Daniel Vieira, Marjorie A. Chan, Yolanda Gil, Terry L. Pavlis, Frank S. Spear, Basil Tikoff (2015). Field Data Management: Integrating Cyberscience and Geoscience. Earth and Space Science News.

Imme Ebert-Uphoff, Yolanda Gil (2015). Exploring Synergies between Machine Learning and Knowledge Representation to Capture Scientific Knowledge. First International Workshop on Capturing Scientific Knowledge (SciKnow).

(2015). EarthCube 2015 Highlights.

Chris A. Mattmann, Ji-Hyun Oh, Tyler Palsulich, Lewis John McGibbney, Yolanda Gil, Varun Ratnakar (2015). DRAT: An Unobtrusive, Scalable Approach to Large Scale Software License Analysis. Proceedings of the Fourth International Workshop on Software Mining, held in conjunction with the 30th IEEE/ACM International Conference on Automated Software Engineering (ASE).

Felix Michel, Yolanda Gil, Varun Ratnakar, Matheus Hauder (2015). A Virtual Crowdsourcing Community for Open Collaboration in Science Processes. Proceedings of the Americas Conference on Information Systems (AMCIS).

Yolanda Gil, Felix Michel, Varun Ratnakar, Matheus Hauder, Christopher Duffy, Hilary Dugan, Paul Hanson (2015). A Task-Centered Framework for Computationally-Grounded Science Collaborations. Proceedings of the Eleventh IEEE International Conference on eScience.

Yolanda Gil, Felix Michel, Varun Ratnakar, Matheus Hauder (2015). A Semantic, Task-Centered Collaborative Framework for Science. Proceedings of the Twelfth European Semantic Web Conference (ESWC).

Daniel Garijo, Oscar Corcho, Yolanda Gil, Meredith N. Braskie, Derrek Hibar, Xue Hua, Neda Jahanshad, Paul Thompson, Arthur W. Toga (2014). Workflow Reuse in Practice: A Study of Neuroimaging Pipeline Users . Proceedings of the IEEE Conference on e-Science.

Daniel Garijo, Yolanda Gil, Andreas Harth (2014). User Requirements for Geospatial Provenance.

Daniel Garijo, Yolanda Gil, Oscar Corcho (2014). Towards Workflow Ecosystems Through Semantic and Standard Representations. Proceedings of the Ninth Workshop on Workflows in Support of Large-Scale Science (WORKS), held in conjunction with the IEEE ACM International Conference on High-Performance Computing (SC).

Gully APC Burns, Yolanda Gil, Natalia Villanueva-Rosales, Yan Liu (2014). The AAAI Fall Symposium on Discovery Informatics: AI Takes a Science-Centered View on Big Data. AI Magazine.

Alyssa Goodman, Alberto Pepe, Alexander W. Blocker, Christine L. Borgman, Kyle Cranmer, Merce Crosas, Rosanne Di Stefano, Yolanda Gil, Paul Groth, Margaret Hedstrom, David W. Hogg, Vinay Kashyap, Ashish Mahabal, Aneta Siemiginowska, Aleksandra Slavkovic (2014). Ten Simple Rules for the Care and Feeding of Scientific Data. PLOS Computational Biology.

Yolanda Gil (2014). Ten Simple Rules for Starting a Research Group. AI Matters.

Yolanda Gil (2014). Teaching Parallelism Without Programming: A Data Science Curriculum for Non-CS Students. Proceedings of the Workshop on Education for High-Performance Computing (EduHPC), held in conjunction with the IEEE ACM International Conference on High Performance Computing (SC).

Ralph Bergmann, Yolanda Gil (2014). Similarity Assessment and Efficient Retrieval of Semantic Workflows. Information Systems Journal.

Joan Maso, Guillem Closa, Yolanda Gil, Benjamin Pross (2014). Open Geospatial Consortium Testbed 10 Provenance Engineering Report.

Yolanda Gil (2014). Intelligent Workflow Systems and Provenance-Aware Software. Proceedings of the Seventh International Congress on Environmental Modeling and Software.

Andreas Harth, Yolanda Gil (2014). Geospatial Data Integration with Linked Data and Provenance Tracking.

Daniel Garijo, Oscar Corcho, Yolanda Gil, Boris A. Gutman, Ivo D. Dinov, Paul Thompson, Arthur W. Toga (2014). FragFlow: Automated Fragment Detection in Scientific Workflows . Proceedings of the IEEE Conference on e-Science.

Yolanda Gil, Marjorie Chan, Basil Gomez, Bruce Caron (Eds) (2014). EarthCube: Past, Present, and Future.

Yolanda Gil (2014). EarthCube EC3 2014 Field Trip Report.

Yolanda Gil, Eunyoung Moon, James Howison (2014). Collaborative Software Development Needs in Geosciences. Proceedings of the Second Workshop on Sustainable Software for Science: Practice and Experiences (WSSSPE2), held in conjunction with the IEEE ACM International Conference on High Performance Computing (SC).

Daniel Garijo, Yolanda Gil, Andreas Harth (2014). Challenges in Modeling Geospatial Provenance. Proceedings of the Fifth International Provenance and Annotation Workshop (IPAW).

Yolanda Gil (2014). Artificial Intelligence: No Longer Just for You and Me. AI Matters.

Sanmay Das, Susan L. Epstein, Yolanda Gil (2014). Announcing the SIGAI Career Network and Conference. AI Matters.

Yolanda Gil, Mark Greaves, James Hendler, Haym Hirsh (2014). Amplify Scientific Discovery with Artificial Intelligence. Science.

Yolanda Gil, Shannon McWeeney, Christopher E. Mason (2013). Using Semantic Workflows to Disseminate Best Practices and Accelerate Discoveries in Multi-Omic Data Analysis. AAAI Workshop on Expanding the Boundaries of Health Informatics using AI (HIAI), held in conjunction with the Conference of the Association for the Advancement of Artificial Intelligence (AAAI).

Yolanda Gil (2013). Towards Task-Centered Network Models through Semantic Workflows. Proceedings of the IEEE Conference on Intelligence and Security Informatics (ISI).

Yolanda Gil, Varun Ratnakar, Rishi Verma, Andrew Hart, Paul Ramirez, Chris Mattmann, Arni Sumarlidason, Samuel L. Park (2013). Time-Bound Analytic Tasks on Large Datasets through Dynamic Configuration of Workflows. Proceedings of the Eighth Workshop on Workflows in Support of Large-Scale Science (WORKS), held in conjunction with SC 2013.

Yolanda Gil, Angela Knight, Kevin Zhang, Larry Zhang, Varun Ratnakar, Ricky Sethi (2013). The Democratization of Semantic Properties: An Analysis of Semantic Wikis. Seventh IEEE International Conference on Semantic Computing (ICSC).

Yolanda Gil, Haym Hirsh (2013). The AAAI Fall Symposium on \"Discovery Informatics: The Role of AI Research in Innovating Scientific Processes. AI Magazine.

Ricky J. Sethi, Hyunjoon Jo, Yolanda Gil (2013). Structured Analysis of the ISI Atomic Pair Actions Dataset Using Workflows. Pattern Recognition Letters.

Yolanda Gil (2013). Social Knowledge Collection. Handbook of Human Computation.

Daniel Garijo, Sarah Kinnings, Li Xie, Lei Xie, Yinliang Zhang, Philip E. Bourne, Yolanda Gil (2013). Quantifying Reproducibility in Computational Biology: The Case of the Tuberculosis Drugome. PLOS ONE.

Luc Moreau, Paolo Missier, Khalid Belhajjame, Reza B' Far, James Cheney, Sam Coppens, Stephen Cresswell, Yolanda Gil, Paul Groth, Graham Klyne, Timothy Lebo, Jim McCusker, Simon Miles, James Myers, Satya Sahoo, Curt Tilmes (2013). PROV-DM: The PROV Data Model.

Chris A. Mattmann, Duane Waliser, Jinwon Kim, Paul Ramirez, Cameron Goodale, Andrew F. Hart, Paul Loikith, Huikyo Lee, Michael Joyce, Maziyar Boustani, Shakeh Khudikyan, Kim Whitehall, Jesslyn Whittell, Paul Zimdars, Daniel Crichton, Yolanda Gil, Luca Cinquini (2013). Model Evaluation Using the NASA Regional Climate Model Evaluation System (RCMES).

Yolanda Gil (2013). Mapping Semantic Workflows to Alternative Workflow Execution Engines. Seventh IEEE International Conference on Semantic Computing (ICSC).

Ricky J. Sethi, Yolanda Gil, Hyunjoon Jo, Andrew Philpot (2013). Large-Scale Multimedia Content Analysis Using Scientific Workflows. Twenty-First ACM International Conference on Multimedia.

Yolanda Gil, Varun Ratnakar (2013). Knowledge Capture in the Wild: A Perspective from Semantic Wiki Communities. Seventh ACM International Conference on Knowledge Capture (K-CAP).

Yolanda Gil, Christopher E. Mason, Christina Zheng, Shannon McWeeney (2013). Intelligent Assistance to Disseminate Best Practices and Accelerate Discoveries in Cancer Omics.

Daniel Garijo, Oscar Corcho, Yolanda Gil (2013). Detecting Common Scientific Workflow Fragments Using Templates and Execution Provenance. Seventh ACM International Conference on Knowledge Capture (K-CAP).

Daniel Garijo, Pinar Alper, Khalid Belhajjame, Oscar Corcho, Yolanda Gil, Carole Goble (2013). Common Motifs in Scientific Workflows: An Empirical Analysis. Future Generation Computer Systems.

David Kale, Samuel Di, Yan Liu, Yolanda Gil (2013). Capturing Data Analysis Expertise with Visualization in Workflows. AAAI Fall Symposium on Discovery Informatics: AI Takes a Science-Centered View on Big Data.

Yolanda Gil, Angela Knight, Kevin Zhang, Larry Zhang, Ricky Sethi (2013). An Initial Analysis of Semantic Wikis. Proceedings of the ACM International Conference on Intelligent User Interfaces (IUI).

Yolanda Gil, Simon Miles, Khalid Belhajjame, Henela Deus, Daniel Garijo, Graham Klyne, Paolo Missier, Stian Soiland-Reyes, Stephan Zednik (2013). A Primer for the PROV Provenance Model.

Yolanda Gil, Varun Ratnakar, Ewa Deelman, Christopher Mason (2012). Using Semantic Workflows for Genome-Scale Analysis.

Mike P. McCann, Andreas F. Hofmann, Thomas C. Harmon, Yolanda Gil (2012). Scientific Workflows: The Key to Convergence?.

Ricky J. Sethi, Hyunjoon Jo, Yolanda Gil (2012). Reusing Workflow Fragments Across Multiple Data Domains. Proceedings of the Seventh Workshop on Workflows in Support of Large-Scale Science (WORKS-12), held in conjunction with SC 2012.

Paul Groth, Yolanda Gil, James Cheney, Simon Miles (2012). Requirements for Provenance on the Web. International Journal of Digital Curation.

Yolanda Gil, Varun Ratnakar, Paul Hanson (2012). Organic Data Sharing: A Novel Approach to Scientific Data Sharing. Second International Workshop on Linked Science: Tackling Big Data (LISC), held in conjunction with the International Semantic Web Conference (ISWC).

Yolanda Gil, Haym Hirsh (2012). Final Report of the 2012 NSF Workshop on Discovery Informatics.

Ewa Deelman, Chris Duffy, Yolanda Gil, Suresh Marru, Marlon Pierce, Gerry Wiener (2012). EarthCube Report on a Workflows Roadmap for the Geosciences.

Yolanda Gil, Haym Hirsh (2012). Discovery Informatics: AI Opportunities in Scientific Discovery. AAAI Fall Symposium on Discovery Informatics: The Role of AI Research in Innovating Scientific Processes.

Yolanda Gil, Ewa Deelman, Ibrahim Demir, Chris Duffy, Marlon Pierce, Suresh Marru, Gerry Wiener (2012). Designing a Roadmap for Workflow Cyberinfrastructure in the Geosciences: From Big Data to the Long Tail.

Christopher Duffy, Yolanda Gil, Ewa Deelman, Suresh Marru, Marlon Pierce, Ibrahim Demir, Gerry Wiener (2012). Designing a Roadmap for Geoscience Workflows. Eos Transactions of the American Geophysical Union.

Yolanda Gil, Varun Ratnakar, Timothy Chklovski, Paul Groth, Denny Vrandecic (2012). Capturing Common Knowledge about Tasks: Intelligent Assistance for To Do Lists. ACM Transactions on Interactive Intelligent Systems.

Paul Groth, Yolanda Gil, Sara Magliacane (2012). Automatic Metadata Annotation through Reconstructing Provenance. *Proceedings of the Third International Workshop on the role of Semantic Web in Provenance Management (SWPM) *.

Daniel Garijo, Yolanda Gil (2012). Augmenting PROV with Plans in P-PLAN: Scientific Processes as Linked Data. Second International Workshop on Linked Science: Tackling Big Data (LISC), held in conjunction with the International Semantic Web Conference (ISWC).

Yolanda Gil, Varun Ratnakar, Jihie Kim, Pedro Antonio Gonzalez-Calero, Paul Groth, Joshua Moody, Ewa Deelman (2011). Wings: Intelligent Workflow-Based Design of Computational Experiments. IEEE Intelligent Systems.

Denny Vrandecic, Yolanda Gil, Varun Ratnakar (2011). Want World Domination? Play Risk! Matching To-Do items with How-Tos from the Web. Proceedings of the ACM International Conference on Intelligent User Interfaces.

Luc Moreau, Ben Clifford, Juliana Freire, Joe Futrelle, Yolanda Gil, Paul Groth, Natalia Kwasnikowska, Simon Miles, Paolo Missier, Jim Myers, Beth Plale, Yogesh Simmhan, Eric Stephan, Jan Van denBussche (2011). The Open Provenance Model Core Specification (v1.1). Future Generation Computer Systems.

Russell A. Poldrack, Aniket Kittur, Donald Kalar, Eric Miller, Christian Seppa, Yolanda Gil, D. Stott Parker, Fred W. Sabb, Robert M. Bilder (2011). The Cognitive Atlas: Towards a knowledge foundation for cognitive neuroscience. Frontiers in Neuroinformatics.

Yolanda Gil, Varun Ratnakar, Christian Fritz (2011). TellMe: Learning Procedures from Tutorial Instruction. Proceedings of the ACM International Conference on Intelligent User Interfaces.

Denny Vrandecic, Varun Ratnakar, Makrus Kroetzsch, Yolanda Gil (2011). Shortipedia: Aggregating and Curating Semantic Web Data. Journal of Web Semantics.

Ralph Bergmann, Yolanda Gil (2011). Retrieval of Semantic Workflows with Knowledge Intensive Similarity Metrics. Proceedings of the Nineteenth International Conference on Case Based Reasoning (ICCBR).

Yolanda Gil, Pedro Szekely, Sandra Villamizar, Thomas Harmon, Varun Ratnakar, Shubham Gupta, Maria Muslea, Fabio Silva, Craig Knoblock (2011). Mind Your Metadata: Exploiting Semantics for Configuration, Adaptation, and Provenance in Scientific Workflows. Proceedings of the Tenth International Semantic Web Conference (ISWC).

Matheus Hauder, Yolanda Gil, Ricky Sethi, Yan Liu, Hyunjoon Jo (2011). Making Data Analysis Expertise Broadly Accessible through Workflows. Proceedings of the Sixth Workshop on Workflows in Support of Large-Scale Science (WORKS), held in conjunction with SC 2011.

Paul Groth, Yolanda Gil (2011). LinkedDataLens: Linked Data as a Network of Networks. Proceedings of the ACM International Conference on Knowledge Capture (K-CAP).

Paul Groth, Yolanda Gil (2011). Linked Data for Network Science. First International Workshop on Linked Science at the International Semantic Web Conference (ISWC).

Yolanda Gil, Paul Groth (2011). Introduction to the Special Issue on Using Provenance in the Semantic Web. Journal of Web Semantics.

Yolanda Gil (2011). Interactive Knowledge Capture in the New Millenium: How the Semantic Web Changed Everything. Knowledge Engineering Review.

Jihie Kim, Karen Myers, Melinda Gervasio, Yolanda Gil (2011). Goal-Directed Meta-Control for Integrated Procedure Learning. Metareasoning: Thinking about Thinking.

Yolanda Gil, Thomas Harmon (2011). Final Report of the 2011 Workshop on Aquatic Ecosystem Sustainability (WAES).

Ricky J. Sethi, Yolanda Gil (2011). A Social Collaboration Argumentation System for Generating Multi-Faceted Answers in Question and Answer Communities. Proceedings of the AAAI Workshop on Computational Models of Natural Argument.

Yolanda Gil, Pedro Antonio Gonzalez-Calero, Jihie Kim, Joshua Moody, Varun Ratnakar (2011). A Semantic Framework for Automatic Generation of Computational Workflows Using Distributed Data and Component Catalogs. Journal of Experimental and Theoretical Artificial Intelligence.

Daniel Garijo, Yolanda Gil (2011). A New Approach for Publishing Workflows: Abstractions, Standards, and Linked Data. Proceedings of the Sixth Workshop on Workflows in Support of Large-Scale Science (WORKS), held in conjunction with SC 2011.

Matheus Hauder, Yolanda Gil, Yan Liu (2011). A Framework for Efficient Text Analytics through Automatic Configuration and Customization of Scientific Workflows. Proceedings of the Seventh IEEE International Conference on e-Science.

Christian Fritz, Yolanda Gil (2011). A Formal Framework for Combining Natural Instruction and Demonstration for End-User Programming. Proceedings of the ACM International Conference on Intelligent User Interfaces.

Christian Fritz, Yolanda Gil (2010). Towards the Integration of Programming by Demonstration and Programming by Instruction using Golog. Proceedings of the AAAI Workshop on Plan, Activity, and Intent Recognition (PAIR).

Yolanda Gil, Paul Groth, Varun Ratnakar (2010). Social Task Networks: Personal and Collaborative Task Formulation and Management in Social Networking Sites. *Proceedings of the AAAI Fall Symposium on Proactive Assistant Agents *.

Denny Vrandecic, Varun Ratnakar, Makrus Kroetzsch, Yolanda Gil (2010). Shortipedia: Aggregating and Curating Semantic Web Data. Semantic Web Challenge at the International Semantic Web Conference (ISWC).

Yolanda Gil, Christian Fritz (2010). Reasoning about the Appropriate Use of Private Data through Computational Workflows. Proceedings of the AAAI Spring Symposium on Privacy Management.

Jun Zhao, Christian Bizer, Yolanda Gil, Paolo Missier, Satya Sahoo (2010). Provenance Requirements for the Next Version of RDF.

Jihie Kim, Yolanda Gil, Marc Spraragen (2010). Principles for Interactive Acquisition and Validation of Workflows. Journal of Experimental and Theoretical Artificial Intelligence.

Vijay Kumar, Tahsin Kurc, Varun Ratnakar, Jihie Kim, Gaurang Mehta, Karan Vahi, Yoonju Lee Nelson, P. Sadayappan, Ewa Deelman, Yolanda Gil, Mary Hall, Joel Saltz (2010). Parameterized Specification, Configuration, and Execution of Data-Intensive Scientific Workflows. Cluster Computing Journal.

Yolanda Gil, James Cheney, Paul Groth, Olaf Hartig, Simon Miles, Luc Moreau, Paolo Pinheiro daSilva (2010). Final Report of the W3C Provenance Incubator Group.

Yolanda Gil, Varun Ratnakar, Christian Fritz (2010). Assisting Scientists with Complex Data Analysis Tasks through Semantic Workflows. *Proceedings of the AAAI Fall Symposium on Proactive Assistant Agents *.

Yolanda Gil, Jihie Kim, Gonzalo Flórez Puga, Varun Ratnakar, Pedro A. González-Calero (2009). Workflow Matching using Semantic Metadata. Proceedings of the Fifth International Conference on Knowledge Capture (K-CAP).

Paul Groth, Yolanda Gil (2009). Scaffolding Instructions to Learn Procedures from Users.

Proceedings of the AAAI Spring Symposium on Agents that Learn from Human Teachers*

Yolanda Gil, Natasha Fridman Noy (2009). Proceedings of the 5th International Conference on Knowledge Capture (K-CAP). Association for Computing Machinery.

Yolanda Gil, Paul Groth, Varun Ratnakar (2009). Leveraging Social Networking Sites to Acquire Rich Task Structure.

Proceedings of the IJCAI Workshop on User-Contributed Knowledge and Artificial Intelligence: An Evolving Synergy (WikiAI), held in conjunction with the Twenty-First International Joint Conference on Artificial Intelligence (IJCAI)*

Tahsin M. Kurç, Shannon Hastings, Vijay S. Kumar, Stephen Langella, Ashish Sharma, Tony Pan, Scott Oster, David Ervin, Justin Permar, Sivaramakrishnan Narayanan, Yolanda Gil, Ewa Deelman, Mary W. Hall, Joel H. Saltz (2009). High Performance Computing and Grid Computing for Integrative Biomedical Research. Journal of High Performance Computing Applications.

Yolanda Gil (2009). From Data to Knowledge to Discoveries: Artificial Intelligence and Scientific Workflows. Scientific Programming.

Yolanda Gil, Paul Groth, Varun Ratnakar, Christian Fritz (2009). Expressive Reusable Workflow Templates. Proceedings of the Fifth IEEE International Conference on e-Science (e-Science).

Paul T. Groth, Simon Miles, Sanjay Modgil, Nir Oren, Michael Luck, Yolanda Gil (2009). Determining the Trustworthiness of New Electronic Contracts. Proceedings of the Tenth Annual Workshop on Engineering Societies in the Agents World (ESAW).

Paul T. Groth, Yolanda Gil (2009). Analyzing the Gap between Workflows and their Natural Language Descriptions. Proceedings of the IEEE International Workshop on Scientific Workflows (SWF).

Vijay S. Kumar, P. Sadayappan, Gaurang Mehta, Karan Vahi, Ewa Deelman, Varun Ratnakar, Jihie Kim, Yolanda Gil, Mary W. Hall, Tahsin M. Kurç, Joel H. Saltz (2009). An Integrated Framework for Performance-Based Optimization of Scientific Workflows. Proceedings of the Eighteenth ACM International Symposium on High Performance Distributed Computing (HPDC).

Paul T. Groth, Yolanda Gil (2009). A Scientific Workflow Construction Command Line. Proceedings of the ACM International Conference on Intelligent User Interfaces (IUI).

Yolanda Gil, Varun Ratnakar (2008). Towards Intelligent Assistance for To-Do Lists. Proceedings of the ACM International Conference on Intelligent User Interfaces (IUI).

Mary Hall, Yolanda Gil, Robert Lucas (2008). Self-Configuring Applications for Heterogeneous Systems: Program Composition and Optimization Using Cognitive Techniques. Proceedings of the IEEE, Special Issue on Cutting-Edge Computing: Using New Commodity Architectures.

David Woollard, Nenad Medvidovic, Yolanda Gil, Chris Mattmann (2008). Scientific Software as Workflows: From Discovery to Distribution. IEEE Software.

Jihie Kim, Ewa Deelman, Yolanda Gil, Gaurang Mehta, Varun Ratnakar (2008). Provenance Trails in the Wings/Pegasus Workflow System. Concurrency and Computation: Practice and Experience, Special Issue on the First Provenance Challenge.

Vijay S. Kumar, Mary W. Hall, Jihie Kim, Yolanda Gil, Tahsin M. Kurç, Ewa Deelman, Varun Ratnakar, Joel H. Saltz (2008). Designing and Parameterizing a Workflow for Optimization: A Case Study in Biomedical Imaging. Proceedings of the Twentysecond IEEE International Symposium on Parallel and Distributed Processing (IPDPS).

Yolanda Gil, Varun Ratnakar (2008). Automating To-Do Lists for Users: Interpretation of To-Dos for Selecting and Tasking Agents. Proceedings of the Twenty-Third Conference of the American Association for Artificial Intelligence (AAAI).

Yolanda Gil, Varun Ratnakar, Ewa Deelman, Gaurang Mehta, Jihie Kim (2007). Wings for Pegasus: Creating Large-Scale Scientific Applications Using Semantic Representations of Computational Workflows. Proceedings of the Twenty-Second National Conference on Artificial Intelligence (AAAI).

William Cheung, Yolanda Gil (2007). Towards Privacy Aware Data Analysis Workflows for e-Science. Proceedings of the AAAI Workshop on Semantic e-Science (SeS2007), held in conjunction with the Twenty-Second Conference of the Association for the Advancement of Artificial Intelligence (AAAI).

Yolanda Gil, Donovan Artz (2007). Towards Content Trust of Web Resources. Journal of Web Semantics.

Yolanda Gil, William K. Cheung, Varun Ratnakar, Kai-kin Chan (2007). Privacy Enforcement in Data Analysis Workflows. Proceedings of the AAAI Workshop on Privacy Enforcement and Accountability with Semantics (PEAS), held in conjunction with the Sixth International Semantic Web Conference (ISWC) and the Second Asian Semantic Web Conference (ASWC).

Yolanda Gil, Pedro A. González-Calero, Ewa Deelman (2007). On the Black Art of Designing Computational Workflows. Proceedings of the Second Workshop on Workflows in Support of Large-Scale Science (WORKS), held in conjunction with the IEEE International Symposium on High Performance Distributed Computing (HPDC).

Bhupesh Bansal, Ümit V. Çatalyürek, Jacqueline Chame, Chun Chen, Ewa Deelman, Yolanda Gil, Mary W. Hall, Vijay S. Kumar, Tahsin M. Kurç, Kristina Lerman, Aiichiro Nakano, Yoon-Ju Lee Nelson, Joel H. Saltz, Ashish Sharma, Priya Vashishta (2007). Intelligent Optimization of Parallel and Distributed Applications. Proceedings of the Twentyfirst International Parallel and Distributed Processing Symposium (IPDPS).

Jihie Kim, Yolanda Gil (2007). Incorporating tutoring principles into interactive knowledge acquisition. International Journal of Human-Computer Studies.

Yolanda Gil, Ewa Deelman, Mark H. Ellisman, Thomas Fahringer, Geoffrey Fox, Dennis Gannon, Carole A. Goble, Miron Livny, Luc Moreau, Jim Myers (2007). Examining the Challenges of Scientific Workflows. IEEE Computer.

Yolanda Gil, Timothy Chklovski (2007). Enhancing Interaction with To-Do Lists Using Artificial Assistants. Proceedings of the AAAI Spring Symposium on Interaction Challenges for Artificial Assistants.

Donovan Artz, Yolanda Gil (2007). A survey of trust in computer science and the Semantic Web. Journal of Web Semantics.

Yolanda Gil (2006). Workflow Composition. Workflows for e-Science.

Yolanda Gil, Jihie Kim, Varun Ratnakar, Ewa Deelman (2006). Wings for Pegasus: A Semantic Approach to Creating Very Large Scientific Workflows. Proceedings of the 2006 Workshop on OWL: Experiences and Directions (OWL-ED).

Yolanda Gil, Donovan Artz (2006). Towards Content Trust of Web Resources. Proceedings of the Fifteenth International World Wide Web Conference (WWW).

Jihie Kim, Yolanda Gil, Varun Ratnakar (2006). Semantic Metadata Generation for Large Scientific Workflows. Proceedings of the Fifth International Semantic Web Conference (ISWC).

Tim Chklovski, Jihie Kim, Yolanda Gil (2006). Organizing Argumentation Statements to Support Intelligence Analysis. Proceedings of the Workshop on Intelligent User Interfaces for Intelligence Analysis at the ACM International Conference on Intelligent User Interfaces.

Yolanda Gil (2006). On Agents and Grids: Creating the Fabric of a New Generation of Distributed Intelligent Systems. Journal of Web Semantics.

Yolanda Gil, Varun Ratnakar, Ewa Deelman (2006). Metadata Catalogs with Semantic Representations. Proceedings of the International Provenance and Annotation Workshop (IPAW).

Ewa Deelman, Yolanda Gil (2006). Managing Large-Scale Scientific Workflows in Distributed Environments: Experiences and Challenges. Proceedings of the Workshop on Scientific Workflows and Business Workflow Standards in e-Science of the Second International Conference on e-Science and Grid Technologies (e-Science).

Ewa Deelman, Yolanda Gil (Co-Chairs) (2006). Final Report of the NSF Workshop on Challenges of Scientific Workflows.

Yolanda Gil, Varun Ratnakar, Ewa Deelman (2005). Virtual Metadata Catalogs: Augmenting Metadata Catalogs with Semantic Representations. Proceedings of the Fourth International Semantic Web Conference (ISWC).

Timothy Chklovski, Varun Ratnakar, Yolanda Gil (2005). User interfaces with semi-formal representations: a study of designing argumentation structures. Proceedings of the ACM International Conference on Intelligent User Interfaces (IUI).

Tim Chklovski, Yolanda Gil (2005). Towards Managing Knowledge Collection from Volunteer Contributors. Proceedings of the AAAI Spring Symposium on Knowledge Collection from Volunteer Contributors (KCVC).

James Blythe, S. Jain, Ewa Deelman, Yolanda Gil, Karan Vahi, Anirban Mandal, Ken Kennedy (2005). Task scheduling strategies for workflow-based applications in grids. Proceedings of the Fifth International Symposium on Cluster Computing and the Grid (CCGrid).

P. Maechling, H. Chalupsky, M. Dougherty, E. Deelman, Y. Gil, S. Gullapalli, V. Gupta, C. Kesselman, J. Kim, G. Mehta, B. Mendenhall, T. Russ, G. Singh, M. Spraragen, G. Staples, K. Vahi (2005). Simplifying Construction of Complex Workflows for Non-Expert Users of the Southern California Earthquake Center Community Modelling Environment. ACM SIGMOD Record, Special Issue on Scientific Workflows.

E. Deelman, G. Singh, M. Su, J. Blythe, Y. Gil, C. Kesselman, J. Kim, G. Mehta, K. Vahi, G. B. Berriman, J. Good, A. Laity, J. C. Jacob, D. S. Katz (2005). Pegasus: A Framework for Mapping Complex Scientific Workflows onto Distributed Systems. Scientific Programming.

Timothy Chklovski, Yolanda Gil (2005). Improving the design of intelligent acquisition interfaces for collecting world knowledge from web contributors. Proceedings of the Third International Conference on Knowledge Capture (K-CAP).

Yolanda Gil (2005). Description Logics and Planning. AI Magazine.

Timothy Chklovski, Yolanda Gil (2005). An Analysis of Knowledge Collected from Volunteer Contributors. Proceedings of the Twentieth National Conference on Artificial Intelligence (AAAI).

Ewa Deelman, James Blythe, Yolanda Gil, Carl Kesselman, Gaurang Mehta, Sonal Patil, Mei-Hui Su, Karan Vahi, Miron Livny (2004). Pegasus: Mapping Scientific Workflows onto the Grid. Proceedings of the Second European Across Grids Conference (AxGrids).

Jim Blythe, Yolanda Gil (2004). Incremental formalization of document annotations through ontology-based paraphrasing. Proceedings of the 13th International World Wide Web Conference (WWW).

David DeRoure, Yolanda Gil, Jim Hendler (Eds) (2004). Guest Editor' s Introduction to the Special Issue on e-Science. IEEE Intelligent Systems.

Jim Blythe, Ewa Deelman, Yolanda Gil (2004). Automatically Composed Workflows for Grid Environments. IEEE Intelligent Systems.

Yolanda Gil, Ewa Deelman, Jim Blythe, Carl Kesselman, Hongsuda Tangmunarunkit (2004). Artificial Intelligence and Grids: Workflow Planning and Beyond. IEEE Intelligent Systems.

Rattapoom Tuchinda, Snehal Thakkar, Yolanda Gil, Ewa Deelman (2004). Artemis: Integrating Scientific Data on the Grid. Proceedings of the Sixteenth Conference on Innovative Applications of Artificial Intelligence (IAAI).

Jihie Kim, Marc Spraragen, Yolanda Gil (2004). An intelligent assistant for interactive workflow composition. Proceedings of the ACM International Conference on Intelligent User Interfaces.

Michael Bada, Robert Stevens, Carole A. Goble, Yolanda Gil, Michael Ashburner, Judith A. Blake, J. Michael Cherry, Midori A. Harris, Suzanna Lewis (2004). A short study on the success of the Gene Ontology. Journal of Web Semantics.

Ewa Deelman, James Blythe, Yolanda Gil, Carl Kesselman (2003). Workflow Management in GriPhyN. Grid Resource Management.

Timothy Chklovski, Yolanda Gil, Varun Ratnakar, John Lee (2003). TRELLIS: Supporting Decision Making via Argumentation in the Semantic Web. Proceedings of Second International Semantic Web Conference (ISWC).

Jim Blythe, Ewa Deelman, Yolanda Gil, Carl Kesselman (2003). Transparent Grid Computing: A Knowledge-Based Approach. Proceedings of the Fifteenth Conference on Innovative Applications of Artificial Intelligence (IAAI).

Jim Blythe, Ewa Deelman, Yolanda Gil, Carl Kesselman, Amit Agarwal, Gaurang Mehta, Karan Vahi (2003). The Role of Planning in Grid Computing. Proceedings of the Thirteenth International Conference on Automated Planning and Scheduling (ICAPS).

Jihie Kim, Yolanda Gil (2003). Proactive Acquisition from Tutoring and Learning Principles. Proceedings of the Eleventh International Conference on Artificial Intelligence in Education (AI-ED).

Ewa Deelman, James Blythe, Yolanda Gil, Carl Kesselman, Scott Koranda, Albert Lazzarini, Gaurang Mehta, Maria Alessandra Papa, Karan Vahi (2003). Pegasus and the Pulsar Search: From Metadata to Execution on the Grid. Applications Grid Workshop at the Fifth International Conference on Parallel Processing and Applied Mathematics (PPAM).

Ewa Deelman, Jim Blythe, Yolanda Gil, Carl Kesselman, Gaurang Mehta, Karan Vahi, Kent Blackburn, Albert Lazzarini, Adam Arbree, Richard Cavanaugh, Scott Koranda (2003). Mapping Abstract Workflows onto Grid Environments. Journal of Grid Computing.

Yolanda Gil (2003). Knowledge Mobility: Semantics for the Web as a White Knight for Knowledge-Based Systems. Spinning the Semantic Web: Bringing the World Wide Web to Its Full Potential.

Yolanda Gil, Varun Ratnakar (2002). Trusting Information Sources One Citizen at a Time. Proceedings of the First Semantic Web Conference (ISWC).

Yolanda Gil, Varun Ratnakar (2002). TRELLIS: An Interactive Tool for Capturing Information Analysis and Decision Making. Proceedings of the Thirteenth International Conference on Knowledge Engineering and Knowledge Management (EKAW).

Yolanda Gil, Jihie Kim (2002). Interactive Knowledge Acquisition Tools: A Tutoring Perspective. Proceedings of the 24th Annual Meeting of the Cognitive Science Society (CogSci), Fairfax, VA, August 8-10.

Yolanda Gil, Varun Ratnakar (2002). IKRAFT: Interactive Knowledge Representation and Acquisition from Text. Proceedings of the Thirteenth International Conference on Knowledge Engineering and Knowledge Management (EKAW).

Jihie Kim, Yolanda Gil (2002). Deriving Acquisition Principles from Tutoring Principles. Proceedings of the International Conference on Intelligent Tutoring Systems (ITS).

Hans Chalupsky, Yolanda Gil, Craig Knoblock, Kristina Lerman, Jean Oh, David Pynadath, Thomas Russ, Milind Tambe (2002). Agent Technology to Support Human Organizations. AI Magazine.

Yolanda Gil, Varun Ratnakar (2002). A Comparison of (Semantic) Markup Languages. Proceedings of the Fifteenth International Florida Artificial Intelligence Research Society Conference (FLAIRS).

Marcelo Tallis, Jihie Kim, Yolanda Gil (2001). User Studies of Knowledge Acquisition Tools: Methodology and Lessons Learned. Journal of Experimental and Theoretical Artificial Intelligence.

Yolanda Gil, Surya Ramachandran (2001). PHOSPHORUS: a task-based agent matchmaker. Proceedings of the Fifth International Conference on Autonomous Agents.

Peter Clark, John Thompson, Ken Barker, Bruce Porter, Vinay Chaudhi, Andres Rodriguez, Jerome Thomere, Sunil Mishra, Yolanda Gil, Pat Hayes, Thomas Reichherzer (2001). Knowledge Entry as Graphical Assembly of Components. Proceedings of the First International Conference on Knowledge Capture (K-CAP).

Jihie Kim, Yolanda Gil (2001). Knowledge Analysis on Process Models. Proceedings of the Seventeenth International Joint Conference on Artificial Intelligence (IJCAI).

Hans Chalupsky, Yolanda Gil, Craig A. Knoblock, Kristina Lerman, Jean Oh, David V. Pynadath, Thomas A. Russ, Milind Tambe (2001). Electric Elves: Applying Agent Technology to Support Human Organizations. Proceedings of the Thirteenth Innovative Applications of Artificial Intelligence Conference (IAAI).

Jim Blythe, Jihie Kim, Surya Ramachandran, Yolanda Gil (2001). An integrated environment for knowledge acquisition. Proceedings of the ACM International Conference on Intelligent User Interfaces (IUI).

Jihie Kim, Yolanda Gil (2000). User studies of an interdependency-based interface for acquiring problem-solving knowledge. IUI.

Yolanda Gil, Jim Blythe (2000). PLANET: A Shareable and Reusable Ontology for Representing Plans. AAAI Workshop on Representational Issues for Real-World Planning Systems.

Yolanda Gil, Jim Blythe (2000). How Can a Structured Representation of Capabilities Help in Planning?. AAAI 2000 Workshop on Representational Issues for Real-world Planning Systems.

Jihie Kim, Yolanda Gil (2000). Acquiring Problem-Solving Knowledge from End Users: Putting Interdependency Models to the Test. Proceedings of the Seventeenth National Conference on Artificial Intelligence (AAAI).

Andre Valente, James Blythe, Yolanda Gil, William Swartout (1999). On the Role of Humans in Enterprise Control Systems: the Experience of INSPECT. First DARPA-JFACC Symposium on Advances in Enterprise Control.

Marcelo Tallis, Yolanda Gil (1999). Designing Scripts to Guide Users in Modifying Knowledge-based Systems. Proceedings of the Sixteenth National Conference on Artificial Intelligence (AAAI).

Jihie Kim, Yolanda Gil (1999). Deriving Expectations to Guide Knowledge Base Creation. Proceedings of the Sixteenth National Conference on Artificial Intelligence (AAAI).

Yolanda Gil, Marcelo Tallis (1997). A Script-Based Approach to Modifying Knowledge Bases. Proceedings of the Fourteenth National Conference on Artificial Intelligence (AAAI).

Yolanda Gil, Pedro A. González (1996). Subsumption-Based Matching: Bringing Semantics to Goals. Proceedings of the International Workshop on Description Logics (DL).

Yolanda Gil (1996). Planning Experiments: Resolving Interactions between Two Planning Spaces. Proceedings of the Third International Conference on Artificial Intelligence Planning Systems (AIPS).

Yolanda Gil, Eric Melz (1996). Explicit Representations of Problem-Solving Strategies to Support Knowledge Acquisition. Proceedings of the Thirteenth National Conference on Artificial Intelligence (AAAI).

Yolanda Gil, William Swartout (1996). EXPECT: A User-Centered Environment for the Development and Adaptation of Knowledge-Based Planning Aids. Advanced Planning Technology: Technological Achievements of the ARPA/Rome Laboratory Planning Initiative, Austin Tate (Ed).

Jaime Carbonell, Oren Etzioni, Yolanda Gil, Robert Joseph, Craig Knoblock, Steven Minton, Manuela Veloso (1995). Planning and Learning in Prodigy: Overview of an Integrated Architecture. Goal-Driven Learning.

Cecile Paris, Yolanda Gil (1994). Towards Method-Independent Knowledge Acquisition. Knowledge Acquisition.

Yolanda Gil (1994). Learning by Experimentation: Incremental Refinement of Incomplete Planning Domains. Proceedings of the Eleventh International Machine Learning Conference (ICML).

Yolanda Gil (1994). Knowledge Refinement in a Reflective Architecture. Proceedings of the Twelfth National Conference on Artificial Intelligence (AAAI).

Yolanda Gil (1993). Efficient Domain-Independent Experimentation. Proceedings of the Tenth International Machine Learning Conference (ICML).